PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G247800.1
Common NameB456_002G247800, LOC105786415
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 482aa    MW: 54042.1 Da    PI: 8.8002
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G247800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.61.4e-08350397448
                         S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                         WT  E  +lvd+++q+G g+W+ I + +      Rt+ +++++w+++l
  Gorai.002G247800.1 350 WTLAEVIKLVDGIAQYGVGRWTDIKKLLFassAYRTPVDLRDKWRNLL 397
                         ********************************99************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.078342401IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-11342401IPR009057Homeodomain-like
SMARTSM007171.3E-8346399IPR001005SANT/Myb domain
CDDcd116609.94E-18348398No hitNo description
SuperFamilySSF466891.12E-15348407IPR009057Homeodomain-like
PfamPF002499.8E-7350397IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MRTERKPHLI KKPADVKRQS VDESLGPGLK DEATEVEHLL VEPKSEHVSV DRVFCFGKEN  60
IEKHLKMEDF SCAFDYGWKI GSGGLDSIHG QGGDDLKLEV LDGLLDEVDE VDDIQAAHDL  120
SSACEDFLLD IEFPEKFSEL DCGPYVGSNL RNSSSESHSP GGSSNSVGGM SESSIVTVQE  180
SNSKNGVLGK MVNCDIHHTI RSECGCQAPV METIRPSKEH GQDFVESDDE KPLVSFIVSN  240
KKVKSSVKVT KGGTLLRQKR LRKPTKRYIE EFSRNSTTSG KNKCLKVRSQ EEFSQVPSES  300
QSRRGRPKKI MPKMEFESDC ELSASESEDE CKRTKRFKTA CDRRKHQRMW TLAEVIKLVD  360
GIAQYGVGRW TDIKKLLFAS SAYRTPVDLR DKWRNLLRSS SAHKHNRKEL QGETNMKHYV  420
RPLPKTVVCR IRELATIHPY PKARSPNLSS INSDPSSKQP TTTKAAPINT HGRNLRGKKC  480
N*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.5890.0flower|seedling| flowering
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO487802130.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012468282.10.0PREDICTED: uncharacterized protein LOC105786415 isoform X1
RefseqXP_012468283.10.0PREDICTED: uncharacterized protein LOC105786415 isoform X1
TrEMBLA0A0D2MFM90.0A0A0D2MFM9_G
STRINGVIT_08s0040g01640.t011e-124(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92001927
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.25e-24TRF-like 6
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]